2023 Scientific Publications

December 2023

Fiebig, A., Schnizlein, M. K., Pena-Rivera, S., Trigodet, F., Dubey, A. A., Hennessy, M. K., Basu, A., Pott, S., Dalal, S., Rubin, D.,Sogin, M. L., Eren, A. M., Chang, E. B., & Crosson, S. (2023). Bile acid fitness determinants of aBacteroides fragilisisolate from a human pouchitis patient.mBio.

Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., Järveoja, J., Hawman, P., Mishra, D., Smith, D., D’Acunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P.,Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O’Halloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types.Wetlands.

Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., &Maignien, L.(2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments.ISME Communications.

November 2023

Ahkami, A. H., Qafoku, O., Roose, T., Mou, Q., Lu, Y.,Cardon, Z. G., Wu, Y., Chou, C., Fisher, J. B., Varga, T., Handakumbura, P., Aufrecht, J. A., Bhattacharjee, A., & Moran, J. J. (2024). Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics – Review and research perspectives.Soil Biology and Biochemistry.

Anthonies, S., &Vargas-Muñiz, J. M.(2022).Hortaea werneckiiisolates exhibit different pathogenic potential in the invertebrate infection modelGalleria mellonella.Frontiers in Fungal Biology.

Arkhipova, I. R., Burns, K. H., Chiappinelli, K. B., Chuong, E. B., Goubert, C., Guarné, A., Larracuente, A. M., Lee, E. A., & Levin, H. L. (2023). Meeting report: Transposable elements at the crossroads of evolution, health and disease 2023.Mobile DNA.

Arkhipova, I., &Yushenova, I.(2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes.Biochemistry (Moscow).

Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N.,Abbo, L., Lindén, S. K., &Wikstrom, J. D.(2023). Mass Spectrometry Analysis of Shark Skin Proteins.International Journal of Molecular Sciences.

Beca-Carretero, P., Winters, G.,Teichberg, M., Procaccini, G., Schneekloth, F., Zambrano, R. H., Chiquillo, K., & Reuters, H. (2024). Climate change and the presence of invasive species will threaten the persistence of the Mediterranean seagrass community.Science of The Total Environment.

Haviland, K. A.,Hayn, M., &Howarth, R. W.(2023). Lab-based multispectral photography for approximating chlorophyll content inZostera marina.Limnology and Oceanography: Methods.

Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., &Worden, A. Z.(2023). Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias.Molecular Biology and Evolution.

Rees, J. M.,Palmer, M. A., &Gillis, J. A.(2023). Fgf signalling is required for gill slit formation in the skate,Leucoraja erinacea.Developmental Biology.

Thayer, R., &Patel, N.(2023). A meta-analysis of butterfly structural colors: Their color range, distribution and biological production.Journal of Experimental Biology.

Wallace, J. N.,Crockford, Z. C.,Román-Vendrell, C.,Brady, E. B.,Hoffmann, C.,Vargas, K. J., Potcoava, M.,Wegman, M. E., Alford, S. T.,Milovanovic, D., &Morgan, J. R.(2023). Excess Phosphoserine-129 α-Synuclein Induces Synaptic Vesicle Trafficking and Declustering Defects at a Vertebrate Synapse.Molecular Biology of the Cell.

Zheng, J., Mallon, J.,Lammers, A., Rados, T.,Litschel, T., Moody, E. R. R., Ramirez-Diaz, D. A., Schmid, A., Williams, T. A., Bisson-Filho, A. W., & Garner, E. (2023). Salactin, a dynamically unstable actin homolog in Haloarchaea.mBio.

October 2023

Albertin, C. B., & Katz, P. S. (2023). Evolution of cephalopod nervous systems.Current Biology.

Bowen, J. L., Spivak, A. C., Bernhard, A. E., Fulweiler, R. W., &Giblin, A. E.(2023). Salt marsh nitrogen cycling: Where land meets sea.Trends in Microbiology.

Cauret, C. M. S.,Jordan, D. C., Kukoly, L. M.,Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M.,Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frogXenopus laevis.PLOS Genetics.

Chancellor, S.,Grasse, B.,Sakmar, T., Scheel, D., Brown, J. S., & Santymire, R. M. (2023). Exploring the Effect of Age on the Reproductive and Stress Physiology ofOctopus bimaculoidesUsing Dermal Hormones.Animals.

Chavez Ramirez, C., Khoo, M., Lopez G, M.,Ferguson, S.,Walker, S., &Echeverri, K.(2023). Comparison of Blastema Formation after Injury in Two Cephalopod Species.microPublication Biology.

Fisher, G., Roman-Vendrell, C., Brady, E., & Morgan, J.(2023). Ɑ-synuclein alters the morphology of synaptic mitochondria in giant axons of sea lamprey.IBRO Neuroscience Reports.

Galarza-Muñoz, G., Soto-Morales, S., Jiao, S., Holmgren, M., &Rosenthal, J.(2023). Molecular determinants for cold adaptation in an Antarctic Na+/K+-ATPase.Proceedings of the National Academy of Sciences of the United States of America.

Learn More: Pumped for Frigid Weather: Discovering Cold Adaptations in the Antarctic Octopus

König, S., Schmidt, N., Bechberger, K.,Morris, S., Priego, M., Zaky, H.,Song, Y., Pielage, J., Brunholz, S.,Brady, S. T., Kins, S., &Morfini, G.(2023). Axon-Autonomous Effects of the Amyloid Precursor Protein Intracellular Domain (AICD) on Kinase Signaling and Fast Axonal Transport.Cells.

LaFountain Jr, J. R., Seaman, C. E., Cohan, C. S., &Oldenbourg, R.(2023). Sliding of antiparallel microtubules drives bipolarization of monoastral spindles.Cytoskeleton.

Marino, R., Hayn, M.,Howarth, R. W.,Giblin, A. E., McGlathery, K. J., & Berg, P. (2023). Nitrogen fixation associated with epiphytes on the seagrassZostera marinain a temperate lagoon with moderate to high nitrogen loads.Biogeochemistry.

Massoud, E., Hoffman, F., Shi, Z., Tang, J., Alhajjar, E., Barnes, M., Braghiere, R.,Cardon, Z., Collier, N., Crompton, O., Dennedy-Frank, P., Gautam, S., Gonzalez-Meler, M., Green, J., Koven, C., Levine, P., MacBean, N., Mao, J., Mills, R., Mishra, U., Mudunuru, M., Renchon, A. A., Scott, S., Siirila-Woodburn, E. R., Sprenger, M., Tague, C., Wang, Y., Xu, C., & Zarakas, C. (2023). Perspectives on Artificial Intelligence for Predictions in Ecohydrology.Artificial Intelligence for the Earth Systems.

Jimenez-Guri, E., Murano, C.,Paganos, P., & Arnone, M. I. (2023). PVC pellet leachates affect adult immune system and embryonic development but not reproductive capacity in the sea urchinParacentrotus lividus.Marine Pollution Bulletin.

Pérez Castro, S.,Peredo, E., Mason, O., Vineis, J., Bowen, J., Mortazavi, B.,Ganesh, A.,Ruff, S.,Paul, B.,Giblin, A., &Cardon, Z.(2023). Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes.Applied and Environmental Microbiology.

Learn More: Analysis Finds Diversity on the Smallest Scales in Sulfur-Cycling Salt Marsh Microbes

Ruff, S., & Baker, B. (2023). Editorial: Rising stars in hydrothermal vents and cold seeps: 2021.Frontiers in Microbiology.

Strauss, J., Deng, L., Gao, S., Toseland, A., Bachy, C., Zhang, C., Kirkham, A., Hopes, A., Utting, R., Joest, E. F., Tagliabue, A., Löw, C.,Worden, A. Z., Nagel, G., & Mock, T. (2023). Plastid-localized xanthorhodopsin increases diatom biomass and ecosystem productivity in iron-limited surface oceans.Nature Microbiology.

Wei, H., Xu, X., Savoie, A., Schattle, E., Hardison, A., Erdner, D., &McClelland, J.(2023). Seasonal and nutrient controls on phytoplankton in the Aransas River tidal freshwater zone, Texas, USA.Hydrobiologia.

Wu-Woods, N. J., Barlow, J. T., Trigodet, F., Shaw, D. G., Romano, A. E., Jabri, B.,Eren, A. M., & Ismagilov, R. F. (2023). Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples.Nature Methods.

Zammit, M., Kao, C.-M., Zhang, H., Tsai, H.-M., Holderman, N., Mitchell, S., Tanios, E., Bhuiyan, M., Freifelder, R., Kucharski, A.,Green, W., Mukherjee, J., & Chen, C.-T. (2023). Evaluation of an Image-Derived Input Function for Kinetic Modeling of Nicotinic Acetylcholine Receptor-Binding PET Ligands in Mice.International Journal of Molecular Sciences.

September 2023

Bachar-Wikstrom, E., Thomsson, K. A., Sihlbom, C.,Abbo, L., Tartor, H., Lindén, S. K., &Wikstrom, J. D.(2023). Identification of Novel Glycans in the Mucus Layer of Shark and Skate Skin.International Journal of Molecular Sciences.

Baker, J. L.,Mark Welch, J. L., Kauffman, K. M., McLean, J. S., & He, X. (2023). The oral microbiome: Diversity, biogeography and human health.Nature Reviews Microbiology.

Guimond, J. A., Demir, C., Kurylyk, B. L., Walvoord, M. A.,McClelland, J. W., & Cardenas, M. B. (2023). Wind-modulated groundwater discharge along a microtidal Arctic coastline.Environmental Research Letters.

Lee, J. S., Lowell, J. L., Whitewater, K., Roane, T. M., Miller, C. S., Chan, A. P.,Sylvester, A. W., Jackson, D., & Hunter, L. E. (2023). Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework.Molecular Ecology Resources.

Moon, T., Thoman, R., Druckenmiller, M., Ahmasuk, B., Backensto, S., Ballinger, T., Benestad, R., Berner, L., Bernhard, G., Bhatt, U., Bigalke, S., BjerkeJarle, W., Brettschneider, B., Christiansen, H., Cohen, J., Decharme, B., Derksen, C., Divine, D., Drost, J., Druckenmiller, M. L., EliasChereque, A., Epstein, H. E., Fausto, R. S., Fettweis, X., Fioletov, V. E., Forbes, B. C., Frost, G. V., Gerland, S., Goetz, S. J., Grooß, J.-U., Hanna, E., Hanssen-Bauer, I., Hendricks, S., Holmes, R. M., Ialongo, I., Isaksen, K., Johnsen, B., Jones, T., Kaler, R. S. A., Kaleschke, L., Kim, S.-J., Labe, Z. M., Lader, R., Lakkala, K., Lara, M. J., Lindsey, J., Loomis, B. D., Luojus, K., Macander, M. J., Mamen, J., Mankoff, K. D., Manney, G. L., McAfee, S. A.,McClelland, J. W., Meier, W. N., Moon, T. A, Moore, G. W. K., Mote, T. L., Mudryk, L., Muller, R., Nyland, K. E., Overland, J. E., Parrish, J. K., Perovich, D. K., Petersen, G. N., Petty, A., Phoenix, G. K., Poinar, K., Rantanen, M., Ricker, R., Romanovsky, V. E., Serbin, S. P., Serreze, M. C., Sheffield, G., Shiklomanov, A. I., Shiklomanov, N. I., Smith, S. L., Spencer, R. G. M., Streletskiy, D. A., Suslova, A., Svendby, T., Tank, S. E., Tedesco, M., Thoman, R. L., Tian-Kunze, X., Timmermans, M.-L., Tommervik, H., Tretiakov, M., Walker, D. A., Walsh, J. E., Wang, M., Webster, M., Wehrle, A., Yang, D., Zolkos, S., Allen, J., Camper, A. V., Haley, B. O., Hammer, G., Love-Brotak, S., Ohlmann, L., Noguchi, L., Riddle, D. B., & Veasey, S. (2023). “The Arctic” in State of the Climate 2022.Bulletin of the American Meteorological Society.

Peña-Montenegro, T. D., Kleindienst, S., Allen, A. E.,Eren, A. M., McCrow, J. P., Sánchez-Calderón, J. D., Arnold, J., & Joye, S. B. (2023). Species-specific responses of marine bacteria to environmental perturbation.ISME Communications.

Strock, S.,Costello, J. H., Daniels, J., Katija, K., &Colin, S. P.(2023). Nectophore coordination and kinematics by physonect siphonophores.Journal of Experimental Biology.

Tarrés, M., Cerdà-Domènech, M.,Pedrosa-Pàmies, R., Baza-Varas, A., Calafat, A., Sanchez-Vidal, A., & Canals, M. (2023). Transport and distributions of naturally and anthropogenically sourced trace metals and Arsenic in submarine canyons.Progress In Oceanography.

Zhang, Y.,Ruff, S. E., Oskolkov, N., Tierney, B. T., Ryon, K., Danko, D., Mason, C. E., & Elhaik, E. (2023). The microbial biodiversity at the archeological site of Tel Megiddo (Israel).Frontiers in Microbiology.

August 2023

Brady, S. T., Mesnard-Hoaglin, N. A., Priego, M., Dziechciowska, J., Morris, S., Kang, M., Tsai, M. Y.,Purks, J. L.,Klein, A., Gaona, A., Melloni, A., Connors, T.,Hyman, B.,Song, Y., &Morfini, G. A.(2023). Toxic effects of mutant huntingtin in axons are mediated by its proline-rich domain.Brain.

Clark, J., Mannino, A., Spencer, R., Tank, S., &McClelland, J.(2023). Quantification of Discharge‐Specific Effects on Dissolved Organic Matter Export From Major Arctic Rivers From 1982 Through 2019.Global Biogeochemical Cycles.

Fakhri, A. M., Warner, M. H.,DeGiorgis, J. A., & Cornely, K. (2023). Mycobacteriophage Rita: A cluster F1 phage discovered in North Easton, Massachusetts.Microbiology Resource Announcements.

Gillis, J. A.(2023). Scales, scutes, and embryonic origins of the vertebrate dermal skeleton.Proceedings of the National Academy of Sciences..

Maienschein, J.(2023). Garland Allen’s Last Book Project.Journal of the History of Biology.

Neher, W., Rasmussen, C., Braybrook, S., Lažetić, V., Stowers, C., Mooney, P.,Sylvester, A., & Springer, P. (2023). The maize preligule band is subdivided into distinct domains with contrasting cellular properties prior to ligule outgrowth.Development.

Rand, D. M., Nunez, J. C. B., Williams, S., Rong, S., Burley, J. T., Neil, K. B., Spierer, A. N., McKerrow, W., Johnson, D. S., Raynes, Y., Fayton, T. J., Skvir, N., Ferranti, D. A., Zeff, M. G., Lyons, A., Okami, N., Morgan, D. M., Kinney, K., Brown, B. R. P.,Giblin, A. E., &Cardon, Z. G.(2023). Parasite manipulation of host phenotypes inferred from transcriptional analyses in a trematode-amphipod system.Molecular Ecology.

Learn more:New Study Shows How Parasites Turn Tiny Brown Amphipods into Neon Zombies

Rastetter, E. B., Griffin, K. L.,Kwiatkowski, B. L., & Kling, G. W. (2023). Ecosystem feedbacks constrain the effect of day-to-day weather variability on land–atmosphere carbon exchange.Global Change Biology.

Saffer, A. M., Baskin, T. I.,Verma, A., Stanislas, T.,Oldenbourg, R., & Irish, V. F. (2023). Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition.The Plant Journal.

Schön, I., Fontaneto, D., &Peredo, E.(2023). Microbiomes of aquatic animals.Hydrobiologia.

Tank, S. E.,McClelland, J. W., Spencer, R. G. M., Shiklomanov, A. I., Suslova, A., Moatar, F., Amon, R. M. W., Cooper, L. W., Elias, G., Gordeev, V. V., Guay, C., Gurtovaya, T. Yu., Kosmenko, L. S., Mutter, E. A.,Peterson, B. J., Peucker-Ehrenbrink, B., Raymond, P. A., Schuster, P. F., Scott, L., Staples, R., Striegl, R. G., Tretiakov, M., Zhulidov, A. V., Zimov, N., Zimov, S., & Holmes, R. M. (2023). Recent trends in the chemistry of major northern rivers signal widespread Arctic change.Nature Geoscience.

Learn more:Decades-Long Arctic Rivers Study Conceived at СƵ Reveals Widespread Change

Van Bruggen, S., Jarrot, P.-A., Thomas, E., Sheehy, C. E., Silva, C. M. S., Hsu, A. Y., Cunin, P., Nigrovic, P. A., Gomes, E. R., Luo, H. R., Waterman, C. M., &Wagner, D. D.(2023). NLRP3 is essential for neutrophil polarization and chemotaxis in response to leukotriene B4 gradient.Proceedings of the National Academy of Sciences.

Voss, G., &Rosenthal, J. J. C.(2023). High-level RNA editing diversifies the coleoid cephalopod brain proteome.Briefings in Functional Genomics.

July 2023

Allsman, L., Bellinger, M., Huang, V., Duong, M., Contreras, A., Romero, A., Verboonen, B., Sidhu, S., Zhang, X., Steinkraus, H., Uyehara, A., Martinez, S., Sinclair, R., Soriano, G., Diep, B., V., D., Noriega, A., Drakakaki, G.,Sylvester, A., & Rasmussen, C. (2023). Subcellular positioning during cell division and cell plate formation in maize.Frontiers in Plant Science. DOI

Arredondo, M., Fang, Y., Jones, M., Yabusaki, S.,Cardon, Z., & Keiluweit, M. (2023). Resolving dynamic mineral-organic interactions in the rhizosphere by combining in-situ microsensors with plant-soil reactive transport modeling.Soil Biology and Biochemistry. DOI

Feng, H.,Bavister, G.,Gribble, K. E., &Welch, D. B. M.(2023). Highly efficient CRISPR-mediated gene editing in a rotifer.PLOS Biology. DOI

Learn more:Powerful Gene Editing Approach Boosts Rotifers in Pantheon of Laboratory Animals

Fujita, R., Augyte, S., Bender, J., Brittingham, P., Buschmann, A. H., Chalfin, M., Collins, J., Davis, K. A., Gallagher, J. B., Gentry, R., Gruby, R. L., Kleisner, K., Moritsch, M., Price, N.,Roberson, L., Taylor, J., & Yarish, C. (2023). Seaweed blue carbon: Ready? Or Not?Marine Policy. DOI

Holland, P., Langdale, J.,Patel, N., & Stone, G. (2023). Discovery of the bicycle gene family provides new insights into insect manipulation of plant development during gall induction.Faculty Reviews. DOI

Kosmopoulos, J. C.,Campbell, D. E.,Whitaker, R. J., &Wilbanks, E. G.(2023). Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in “Pink Berry” Marine Microbial Aggregates.Applied and Environmental Microbiology.DOI

Lewis, T. R., Phan, S., Castillo, C. M., Kim, K.-Y.,Coppenrath, K.,Thomas, W., Hao, Y., Skiba, N. P.,Horb, M. E., Ellisman, M. H., & Arshavsky, V. Y. (2023). Photoreceptor disc incisures form as an adaptive mechanism ensuring the completion of disc enclosure.eLife.

McGillivary, R. M., Sood, P.,Hammar, K., & Marshall, W. F. (2023). The nuclear transport factor CSE1 drives macronuclear volume increase and macronuclear node coalescence in Stentor coeruleus.IScience

Mugnaini, M.,Mehrotra, D.,Davoine, F.,Sharma, V.,Mendes, A. R., Gerhardt, B., Concha-Miranda, M.,Brecht, M., &Clemens, A. M.(2023). Supra-orbital whiskers act as wind-sensing antennae in rats.PLoS Biology. DOI:

Learn more:Rats Sense the Wind with Antennae-like Whiskers Above their Eyes

Steinbach, R., Baidouri, F.,Mitchison-Field, L., Lim, F., Ekena, J., Vogt, E.,Gladfelter, A., Theberge, A., & Amend, A. (2023).Malasseziais widespread and has undescribed diversity in the marine environment.Fungal Ecology. DOI

Valiela, I.,Lloret, J., &Chenoweth, K.(2023). Effects of Climate Change on Salt Marshes. InClimate Change and Estuaries(1st Edition, pp. 355–380). Taylor & Francis. DOI

June 2023

Ahuja, N., Hwaun, E., Pungor, J. R.,Rafiq, R.,Nemes, S.,Sakmar, T.,Vogt, M. A.,Grasse, B.,Quiroz, J. D., Montague, T. G.,Null, R. W.,Dallis, D. N., Gavriouchkina, D., Marletaz, F.,Abbo, L., Rokhsar, D. S., Niell, C. M., Soltesz, I.,Albertin, C. B., &Rosenthal, J. J. C.(2023). Creation of an albino squid line by CRISPR-Cas9 and its application forin vivofunctional imaging of neural activity.Current Biology.

Learn More:See-through Squid Lets Scientists Study Cephalopod Nervous System

Arkhipova, I.,Yushenova, I., &Rodriguez, F.(2023). Shaping eukaryotic epigenetic systems by horizontal gene transfer.Bioessays. DOI

Baden, T., Briseño, J., Coffing, G., Cohen-Bodénès, S., Courtney, A., Dickerson, D., Dölen, G., Fiorito, G., Gestal, C., Gustafson, T., Heath-Heckman, E., Hua, Q., Imperadore, P., Kimbara, R., Król, M., Lajbner, Z., Lichilín, N., Macchi, F., McCoy, M. J., Nishiguchi, M. K., Nyholm, S. V., Otjacques, E., Perez-Ferrer, P. A., Ponte, G., Pungor, J. R., Rogers, T. F.,Rosenthal, J. J. C., Rouressol, L., Rubas, N., Sanchez, G., Santos, C. P., Schultz, D. T., Seuntjens, E., Songco-Casey, J. O., Stewart, I. E., Styfhals, R., Tuanapaya, S., Vijayan, N., Weissenbacher, A., Zifcakova, L., Schulz, G., Weertman, W., Simakov, O., &Albertin, C.(2023). Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology.Integrative and Comparative Biology. DOI

Birk, M. A., Liscovitch-Brauer, N., Dominguez, M. J., McNeme, S., Yue, Y., Hoff, J. D., Twersky, I., Verhey, K. J., Sutton, R. B., Eisenberg, E., &Rosenthal, J. J. C.(2023). Temperature-dependent RNA editing in octopus extensively recodes the neural proteome.Cell.

Learn more:Masters of Acclimation: Octopuses Adjust to Cold by Editing their RNA

Eckmann, C. A., Eberle, J. S., Wittmers, F., Wilken, S., Bergauer, K., Poirier, C., Blum, M., Makareviciute-Fichtner, K., Jimenez, V., Bachy, C., Vermeij, M. J. A., &Worden, A. Z.(2023). Eukaryotic algal community composition in tropical environments from solar salterns to the open sea.Frontiers in Marine Science.

Imperadore, P., Jones, K. M.,Morgan, J. R., De Sio, F., & Stahnisch, F. W. (2023). Editorial: Regeneration from cells to limbs: past, present, and future.Frontiers in Cell and Developmental Biology.

Itano, M. S.,Kumar, A., & Maddox, P. S. (2023). Editorial: Live cell imaging: Cell and developmental research bridging education, optical engineering, industry, software, shared facilities.Frontiers in Cell and Developmental Biology.

Jeffery, W. R., Li, B., Ng, M., Li, L., Gorički, Š., &Ma, L.(2023). Differentially expressed chaperone genes reveal a stress response required for unidirectional regeneration in the basal chordateCiona.BMC Biology. DOI

Koop-Jakobsen, K., & Dolch, T. (2023). Future climate conditions alter biomass of salt marsh plants in the Wadden Sea.Marine Biodiversity. DOI

Linklater, D., Vailionis, A., Ryu, M., Kamegaki, S., Morikawa, J., Mu, H., Smith, D., Maasoumi, P., Ford, R., Katkus, T., Blamires, S., Kondo, T., Nishijima, Y., Moraru, D.,Shribak, M., O’Connor, A., Ivanova, E. P., Ng, S. H., Masuda, H., & Juodkazis, S. (2023). Structure and Optical Anisotropy of Spider Scales and Silk: The Use of Chromaticity and Azimuth Colors to Optically Characterize Complex Biological Structures.Nanomaterials.

Miller, S. E., Colman, A. S., & Waldbauer, J. R. (2023). Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities.MSystems. DOI

Ruff, S. E., Humez, P., de Angelis, I. H., Diao, M., Nightingale, M., Cho, S., Connors, L., Kuloyo, O. O., Seltzer, A., Bowman, S., Wankel, S. D., McClain, C. N., Mayer, B., & Strous, M. (2023). Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems.Nature Communications.

Learn more:Life Below Our Feet: Team Discovers Microbes Thriving in Groundwater,Producing Oxygen in the Dark

Strauss, J., Choi, C. J., Grone, J., Wittmers, F., Jimenez, V., Makareviciute-Fichtner, K., Bachy, C., Jaeger, G. S., Poirier, C., Eckmann, C., Spezzano, R., Löscher, C. R., Sarma, V. V. S. S., Mahadevan, A., &Worden, A. Z.(2023). The Bay of Bengal exposes abundant photosynthetic picoplankton and newfound diversity along salinity-driven gradients.Environmental Microbiology. DOI

Torres-Morales, J.,Mark Welch, J. L.,Dewhirst, F. E., & Borisy, G. G. (2023). Site-specialization of human oral Gemella species.Journal of Oral Microbiology.

Vallecillo-Viejo, I. C.,Voss, G.,Albertin, C. B., Liscovitch-Brauer, N., Eisenberg, E., &Rosenthal, J. J. C.(2023). Squid express conserved ADAR orthologs that possess novel features.Frontiers in Genome Editing.

Vicente-Rodríguez, L. C., Torres-Arroyo, A. C., Hernández-Vázquez, A., Rosa-Casillas, M., Bracho-Rincón, D. P., de Jesús, P. M., Behra, M. L., Habib, M. R., Zhou, X.-N.,Rosenthal, J. J. C., & Miller, M. W. (2023). The FMRF-NH2gated sodium channel of Biomphalaria glabrata: Localization and expression following infection bySchistosoma mansoni.PLoS Neglected Tropical Diseases.

von Montfort, G. M.,Costello, J. H.,Colin, S. P., Morandini, A. C., Migotto, A. E., Maronna, M. M., Reginato, M., Miyake, H., & Nagata, R. M. (2023). Ontogenetic transitions, biomechanical trade-offs and macroevolution of scyphozoan medusae swimming patterns.Scientific Reports.

Wilken, S., Yung, C. C. M., Poirier, C., Massana, R., Jimenez, V., &Worden, A. Z. (2023). Choanoflagellates alongside diverse uncultured predatory protists consume the abundant open-ocean cyanobacterium Prochlorococcus. Proceedings of the National Academy of Sciences of the United States of America.

May 2023

Afzal, Z., Lange, J. J., Nolte, C., McKinney, S., Wood, C., Paulson, A., De Kumar, B., Unruh, J., Slaughter, B. D., & Krumlauf, R. (2023). Shared retinoic acid responsive enhancers coordinately regulate nascent transcription ofHoxbcoding and non-coding RNAs in the developing mouse neural tube.Development.

Bois, S., Neill, C., Whittemore, M.,Champlin, L., Beattie, K., Hopping, R., Karberg, J., Lombard, K., Omand, K., Weigand, P., & Wernerehl, R. (2023). Challenges, successes, and recommendations for management of coastal sandplain grasslands as regional biodiversity hotspots in the northeastern United States.Restoration Ecology.

Bos, R. P., Kaul, D., Zettler, E. R., Hoffman, J. M., Dupont, C. L.,Amaral-Zettler, L. A., & Mincer, T. J. (2023). Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients.Environmental Microbiology.

Dimitrakopoulou, D., Khwatenge, C. N., James-Zorn, C., Paiola, M., Bellin, E. W., Tian, Y., Sundararaj, N., Polak, E. J., Grayfer, L., Barnard, D., Ohta, Y.,Horb, M., Sang, Y., & Robert, J. (2023). Advances in theXenopusimmunome: Diversification, expansion, and contraction.Developmental & Comparative Immunology.

Hubbard, C. J., Harrison, J. G., McMinn, R., Bennett Ponsford, J. C.,Maignien, L., Ewers, B., & Weinig, C. (2023). Rhizosphere microbial community composition shifts diurnally and in response to natural variation in host clock phenotype.mSystems

Jum’ah, H.,Shribak, M., Keikhosravi, A., Li, B., Liu, Y., Obaidat, D., Eliceiri, K. W., Loeffler, A., & Ayub, S. (2023). Detection of crystals in joint fluid aspirates with polychromatic polarisation microscopy.Annals of the Rheumatic Diseases.

Maienschein, J.(2023). The Camouflaged Metaphysics of Embryos.Issues in Science and Technology.

Maxson Jones, K., &Morgan, J. R.(2023). Lampreys and spinal cord regeneration: “A very special claim on the interest of zoologists,” 1830s-present.Frontiers in Cell and Developmental Biology.

Min, E., Naeem, S., Gough, L., McLaren, J., Rowe, R.,Rastetter, E., Boelman, N., & Griffin, K. (2023). Using structure to model function: Incorporating canopy structure improves estimates of ecosystem carbon flux in arctic dry heath tundra.Environmental Research Letters.

Mincer, T. J., Bos, R. P., Zettler, E. R., Zhao, S., Asbun, A. A., Orsi, W. D., Guzzetta, V. S., &Amaral-Zettler, L. A.(2023). “Sargasso Sea Vibrio bacteria: Underexplored potential pathovars in a perturbed habitat.”Water Research.

Learn more:A ‘Pathogen’ Storm: Vibrio Bacteria, Sargassum and Plastic Debris

Nichols, R. S.,Moynihan, M. A., & Martin, P. (2023). Alkaline phosphatase activity in an equatorial coral reef ecosystem unrelated to seasonal nutrient dynamics.Coral Reefs.

Perillo, M.,Swartz, S. Z., Pieplow, C., & Wessel, G. M. (2023). Molecular mechanisms of tubulogenesis revealed in the sea star hydro-vascular organ.Nature Communications.

Learn more:Basic ‘Toolkit’ for Organ Development is Illuminated by Sea Star Study

Satterlee, J. W., Evans, L. J., Conlon, B. R., Conklin, P., Martinez-Gomez, J., Yen, J. R., Wu, H.,Sylvester, A. W., Specht, C. D., Cheng, J., Johnston, R., Coen, E., & Scanlon, M. J. (2023). AWox3-patterning module organizes planar growth in grass leaves and ligules.Nature Plants.

Tamm, S.(2023). Morphology and dynamic behavior of anal pores during defecation in the ctenophorePleurobrachia pileus.Invertebrate Biology.

April 2023

Cayemitte, K., Aoki, N.,Ferguson, S. R., Mooney, T. A., & Apprill, A. (2023).Ramicrustainvasive alga causes mortality in Caribbean coral larvae.Frontiers in Marine Science.

Gollnisch, R., Wallenius, J.,Gribble, K. E., Ahrén, D., & Rengefors, K. (2023). SAG-RAD: A method for single-cell population genomics of unicellular eukaryotes.Molecular Biology and Evolution.

Gould, R., & Brady, S. (2023). Identifying mRNAs Residing in Myelinating Oligodendrocyte Processes as a Basis for Understanding Internode Autonomy.Life.

Ghousein, A., Tutagata, J., Schrieke, H., Etienne, M., Chaumeau, V., Boyer, S., Pages, N., Roiz, D.,Eren, A. M., Cambray, G., & Reveillaud, J. (2023). PWCP is a widely distributed and highly conservedWolbachiaplasmid inCulex pipiensandCulex quinquefasciatusmosquitoes worldwide.ISME Communications.

Lundgren, S. N., Madan, J. C., Karagas, M. R.,Morrison, H. G., Christensen, B. C., & Hoen, A. G. (2023). Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life.Frontiers in Microbiology.

Morselli, M., Bennett, R.,Shaidani, N.-I.,Horb, M.,Peshkin, L., & Pellegrini, M. (2023). Age-associated DNA methylation changes in Xenopus frogs.Epigenetics.

Papenbrock, J., &Teichberg, M.(2023). Editorial: Current advances in seagrass research.Frontiers in Plant Science.

Watson, A. R., Füssel, J., Veseli, I., DeLongchamp, J. Z., Silva, M., Trigodet, F., Lolans, K., Shaiber, A., Fogarty, E., Runde, J. M., Quince, C., Yu, M. K., Söylev, A.,Morrison, H. G., Lee, S. T. M., Kao, D., Rubin, D. T., Jabri, B., Louie, T., &Eren, A. M.(2023). Metabolic independence drives gut microbial colonization and resilience in health and disease.Genome Biology.

March 2023

Avram-Shperling, A., Kopel, E., Twersky, I., Gabay, O., Ben-David, A., Karako-Lampert, S.,Rosenthal, J. J. C., Levanon, E. Y., Eisenberg, E., & Ben-Aroya, S. (2023). Identification of exceptionally potent adenosine deaminases RNA editors from high body temperature organisms.PLOS Genetics.

Brady, E. B.,McQuillan, M.,Medeiros, A. T., Bubacco, L., Sousa, R., Lafer, E. M., &Morgan, J. R.(2023). Hsc70 rescues the synaptic vesicle trafficking defects caused by α-synuclein dimers.MicroPublication Biology.

Cai, L., McGuire, N. E.,Hanlon, R., Mooney, T. A., & Girdhar, Y. (2023). Semi-supervised Visual Tracking of Marine Animals Using Autonomous Underwater Vehicles.International Journal of Computer Vision.

Carden, L.,Lloret, J., & Kidwell, S. M. (2023). Dead molluscan shells from multiple trophic groups as archives of nitrogen isotopic evidence of wastewater gradients in estuaries.Marine Pollution Bulletin.

Goodheart, J. A., Collins, A. G., Cummings, M. P., Egger, B., &Rawlinson, K. A.(2023). A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution.Royal Society Open Science.

Hamlet, C., Fauci, L.,Morgan, J. R., & Tytell, E. D. (2023). Proprioceptive feedback amplification restores effective locomotion in a neuromechanical model of lampreys with spinal injuries.Proceedings of the National Academy of Sciences.

Learn More: After Spinal Cord Injury, Kinesthetic Sense Helps Restore Movement, Model Suggests

Kicklighter, D., Lin, T.-S., Zhang, J., Chen, M., Vörösmarty, C., Jain, A., &Melillo, J.(2023). Influence of forest infrastructure on the responses of ecosystem services to climate extremes in the Midwest and Northeast United States from 1980 to 2019.Frontiers in Environmental Science.

Learn More: Framework Helps Local Planners Prepare for Climate Pressures on Food, Energy & Water Systems

Kwiatkowski, E. R.,Schnytzer, Y.,Rosenthal, J. J. C., & Emery, P. (2023). Behavioral circatidal rhythms requireBmal1inParhyale hawaiensis.Current Biology.

Learn More: Clocking the Tides: Gene Linking Circadian and Circatidal Rhythms is Found in Tiny Crustacean

Rees, J. M., Sleight, V. A., Clark, S. J., Nakamura, T., &Gillis, J. A.(2023). Ectodermal Wnt signaling, cell fate determination, and polarity of the skate gill arch skeleton.eLife.

Runde, J., Veseli, I., Fogarty, E. C., Watson, A. R., Clayssen, Q., Yosef, M., Shaiber, A., Verma, R., Quince, C., Gerasimidis, K., Rubin, D. T., &Eren, A. M.(2023). Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn’s Disease.Journal of Crohn’s & Colitis.

Subramanian, E., Elewa, A., Brito, G., Kumar, A., Segerstolpe, Å., Karampelias, C., Björklund, Å., Sandberg, R.,Echeverri, K., Lui, W.-O., Andersson, O., & Simon, A. (2023). A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration.Developmental Cell.

Vörösmarty, C.,Melillo, J., Wuebbles, D., Jain, A., Ando, A., Chen, M., Tuler, S., Smith, R.,Kicklighter, D., Corsi, F., Fekete, B., Miara, A., Bokhari, H., Chang, J., Lin, T.-S., Maxfield, N., Sanyal, S., & Zhang, J. (2023). Applying the framework to study climate-induced extremes on food, energy, and water systems (C-FEWS): The role of engineered and natural infrastructures, technology, and environmental management in the United States Northeast and Midwest.Frontiers in Environmental Science.

Learn More: Framework Helps Local Planners Prepare for Climate Pressures on Food, Energy & Water Systems

Walker, S., Santos-Ferreira, T., &Echeverri, K.(2023). A Reproducible Spinal Cord Crush Injury in the Regeneration-Permissive Axolotl. In A. J. Udvadia & J. B. Antczak (Eds.),Axon Regeneration: Methods and Protocols. Springer US.

Wang, H., Swore, J., Sharma, S.,Szymanski, J. R.,Yuste, R., Daniel, T. L., Regnier, M., Bosma, M. M., &Fairhall, A. L.(2023). A complete biomechanical model of Hydra contractile behaviors, from neural drive to muscle to movement.Proceedings of the National Academy of Sciences.

February 2023

Cannon, K. S., Vargas-Muniz, J. M., Billington, N., Seim, I., Ekena, J., Sellers, J. R., &Gladfelter, A. S.(2023). A gene duplication of a septin reveals a developmentally regulated filament length control mechanism.Journal of Cell Biology.

Diaz Quiroz, J., Ojha, N., Shayhidin, E., De Silva, D., Dabney, J., Lancaster, A., Coull, J., Milstein, S., Fraley, A., Brown, C., &Rosenthal, J.(2023). Development of a selection assay for small guide RNAs that drive efficient site-directed RNA editing. Nucleic Acids Research.

Gainett, G., Klementz, B., Blaszczyk, P.,Bruce, H.,Patel, N., & Sharma, P. (2023). Dual functions of labial resolve the Hox logic of chelicerate head segments.Molecular Biology and Evolution.

Garner, R. M., Molines, A. T., Theriot, J. A.,&Chang, F.(2023). Vast heterogeneity in cytoplasmic diffusion rates revealed by nanorheology and Doppelgänger simulations.Biophysical Journal.

Kiefl, E., Esen, O.,Miller, S., Kroll, K., Willis, A., Rappé, M., Pan, T., &Eren, A.(2023). Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution.Science Advances.

Panlilio, J. M.,Hammar, K. M., Aluru, N., & Hahn, M. E. (2023). Developmental exposure to domoic acid targets reticulospinal neurons and leads to aberrant myelination in the spinal cord.Scientific Reports.

Putland R.L., Mooney T.A. and Mensinger A.F. (2023) Vessel Sound Causes Hearing Loss for Hummingbird Bobtail Squid(Euprymna berryi).Frontiers in Marine Science.

Learn More: What’s That Sound? Ocean Noise Associated With Hearing Loss in Bobtail Squid

Rosenthal, J. J. C., & Eisenberg, E. (2023). Extensive Recoding of the Neural Proteome in Cephalopods by RNA Editing.Annual Review of Animal Biosciences.

Vörösmarty, C.,Melillo, J., Wuebbles, D., Jain, A., Ando, A., Chen, M., Tuler, S., Smith, R.,Kicklighter, D., Corsi, F., Fekete, B., Miara, A., Bokhari, H., Chang, J., Lin, T.-S., Maxfield, N., Sanyal, S., Zhang, J., & Vignoles, D. (2023). The C-FEWS framework: Supporting studies of climate-induced extremes on food, energy, and water systems at the regional scale.Frontiers in Environmental Science.

January 2023

Chaouni, B., Idrissi Azami, A., Raoui, S., Amzazi, S., Nejjari, C., Bakkali, F., Zaid, E. H., Hamamouch, N.,Amaral-Zettler, L.,& Ghazal, H. (2023). Spatio-temporal patterns of Synechococcus oligotypes in Moroccan lagoonal environments.Scientific Reports.

Giacomini, J. J., Torres-Morales, J., Dewhirst, F. E., Borisy, G. G., &Mark Welch, J. L.(2023). Site Specialization of Human Oral Veillonella Species.Microbiology Spectrum.

Li, X., Wu, Y., Su, Y., Rey-Suarez, I., Matthaeus, C., Updegrove, T., Wei, Z., Zhang, L., Sasaki, H., Li, Y., Guo, M., Giannini, J., Vishwasrao, H., Chen, J., Lee, S.-J., Shao, L., Liu, H., Ramamurthi, K., Taraska, J., Upadhyaya, A.,La Riviere, P.,&Shroff, H.(2023). Three-dimensional structured illumination microscopy with enhanced axial resolution.Nature Biotechnology.

Learn More: A Sharper View Inside Cells | HHMI Janelia

Martens, K.,Shribak, M., Arkhipova, I.,& Schön, I. (2023). The common morphospeciesCypridopsis vidua(O.F. MÜLLER, 1776) (Crustacea, Ostracoda) is not an obligate parthenogen.Belgian Journal of Zoology.

Quiroz, J., Siskel, L., & Rosenthal, J.(2023). Site-directed A→I RNA editing as a therapeutic tool: Moving beyond genetic mutations.RNA.

Shi, W., Cannon, K. S., Curtis, B. N., Edelmaier, C.,Gladfelter, A. S., & Nazockdast, E. (2023). Curvature sensing as an emergent property of multiscale assembly of septins.Proceedings of the National Academy of Sciences of the United States of America.

Valiela, I., Chenoweth, K., Lloret, J., Teal, J., Howes, B., & Toner, D. G. (2023). Salt marsh vegetation change during a half-century of experimental nutrient addition and climate-driven controls in Great Sippewissett Marsh.The Science of the Total Environment.

Learn More: Most of the World’s Salt Marshes Could Succumb to Sea Level Rise by Turn of Century

Viana, I. G., Artika, S. R.,Moreira-Saporiti, A.,&Teichberg, M.(2023). Limited trait responses of a tropical seagrass to the combination of increasing pCO2 and warming.Journal of Experimental Botany.